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GST Refund on Inverted Duty Structure - Rule 89(5) calculation explained
GST Updated August 2026 9 min read Author Pavan | Taxation & Finance

Practical Example on GST Refund on Inverted Duty Structure

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Inverted Duty Structure

Inverted Duty Structure refers to a situation where the rate of tax on inputs is higher than the rate of tax on output supplies, resulting in accumulation of ITC in your electronic credit ledger. To support this situation, a registered taxpayer can apply for refund of the accumulated credit under Section 54(3)(ii) of the Central Goods and Services Tax (CGST) Act, 2017. If your GST returns consistently show this pattern of accumulation, it is worth checking whether you qualify for this refund. Refund is calculated as per the formula prescribed in Rule 89(5) of the CGST Rules, 2017, subject to the restrictions prescribed under Notification No. 5/2017-Central Tax (Rate), as amended. Refund must be claimed within two years from the "relevant date" as defined in Explanation (2) to Section 54, CGST Act, 2017.

Eligibility Criteria

  • To claim refund, you must be a registered taxpayer under GST.
  • Your output supplies should not be nil-rated or wholly exempt from tax. The GST rate levied on your output supplies is lower than the rate levied on your inputs.
  • Your output supplies should not include goods specified under Notification No. 5/2017-Central Tax (Rate).

Practical Example

A Bangalore-based manufacturer buys raw material at a high rate of GST and sells the finished product at a lower rate of GST, as follows:

S.No Facts of the Case GST Rate Amount GST Amount
1Output Supply of Product X5%15,00,00075,000
2Output Supply of Product Y18%12,00,0002,16,000
3Output Supply of Product Z12%10,00,0001,20,000
4Output Services5%10,00,00050,000
5Exempted & Nil Supplies0%5,00,000-
6Direct Exports0%20,00,000-
7Raw Material A5%15,00,00075,000
8Raw Material B18%20,00,0003,60,000
9Raw Material C18%10,00,0001,80,000
10Input Services18%10,00,0001,80,000
11Capital Goods18%50,00,0009,00,000

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Let's calculate the amount of eligible refund based on the above facts.

Sections, Rules, Circulars & Notifications Covered

  1. Clause (ii) of first proviso to Section 54(3) of the CGST Act
  2. Sub-section (59) of Section 2 of the CGST Act
  3. Rule 89(5) of the CGST Rules
  4. Circular No. 173/05/2022-GST dated 06-07-2022
  5. Circular No. 125/44/2019-GST dated 18-11-2019
  6. Notification No. 5/2017-Central Tax (Rate) dated 28-06-2017
  7. Notification No. 29/2017-Central Tax (Rate) dated 22-09-2017
  8. Notification No. 44/2017-Central Tax (Rate) dated 14-11-2017
  9. Notification No. 20/2018-Central Tax (Rate) dated 26-07-2018
  10. Notification No. 09/2022-Central Tax (Rate) dated 13-07-2022
  11. Notification No. 20/2023-Central Tax (Rate) dated 19-10-2023
  12. Circular No. 135/05/2020-GST dated 31-03-2020

The Refund Formula: Rule 89(5)

Maximum Refund Amount =
TurnoverIRS × Net ITC Adjusted Total Turnover Tax payable on IRS × Net ITC ITC availed on inputs & input services
IRS = Inverted Rated Supply of goods and services
  • Turnover of inverted rated supply of goods and services — inverted rated supply of goods and services made during the relevant period.
  • Adjusted Total Turnover means the total of the value of:
    1. The turnover in a State or a Union territory, as defined under clause (112) of Section 2, excluding the turnover of services.
    2. The turnover of zero-rated supply of services determined above and non-zero-rated supply of services, excluding the value of exempt supplies other than zero-rated supplies during the relevant period.
  • Net ITC — input tax credit availed only on inputs during the relevant period.
  • Tax payable on such inverted-rated supply — tax paid on inverted rated supplies during the relevant period.
  • Relevant period — the period for which the claim has been filed.

Time Limit for Claim of Refund

The refund application must be filed within two years from the "relevant date" as defined in Explanation (2) to Section 54, CGST Act, 2017.

"Relevant date" means the due date for furnishing of return under Section 39 for the period in which such claim for refund arises.

Calculation of Refund

SI No Particulars Workings Amount
1Turnover of inverted rated supply of goods and services
(i)Output Supply of Product X15,00,000
(ii)Output Supply of Product Z10,00,000
(iii)Output Services10,00,00035,00,000
2Adjusted Total Turnover
(i)Output Supply of Product X15,00,000
(ii)Output Supply of Product Y12,00,000
(iii)Output Supply of Product Z10,00,000
(iv)Output Services10,00,000
(v)Direct Exports20,00,00067,00,000
3Net ITC
(i)Raw Material A75,000
(ii)Raw Material B3,60,000
(iii)Raw Material C1,80,0006,15,000
4Tax payable on such inverted rated supply of goods and services
(i)Output Supply of Product X75,000
(ii)Output Supply of Product Z1,20,000
(iii)Output Services50,0002,45,000
5ITC availed on inputs and input services
(i)Raw Material A75,000
(ii)Raw Material B3,60,000
(iii)Raw Material C1,80,000
(iv)Input Services1,80,0007,95,000
Maximum Refund (1/2 × 3) − (4 × (3/5))1,31,740

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Eligible Refund Amount is Rs. 1,31,740/-

Notes:

  1. Exempted & Nil Supplies is excluded for calculation of Adjusted Total Turnover.
  2. ITC on Input Services and Capital Goods are excluded for calculation of Net ITC.
  3. Export turnover of Rs. 20,00,000/- is considered for calculation of Adjusted Total Turnover in IDS refund calculation. Any application for refund under zero-rated exports follows the provisions under Rule 89(4) of the CGST Rules, 2017.
  4. For this illustration, it is assumed that the inputs are used in the manufacture or making provision for the taxable supplies and that the ITC claimed on such inputs is otherwise eligible for credit.

Goods Restricted From This Refund

The following are the goods specified under Notification No. 5/2017-Central Tax (Rate), for which refund is restricted under Inverted Duty Structure.

S.No Tariff item, heading, subheading or Chapter Description of Goods
1A1507Soya-bean oil and its fractions, whether or not refined, but not chemically modified
1B1508Ground-nut oil and its fractions, whether or not refined, but not chemically modified
1C1509Olive oil and its fractions, whether or not refined, but not chemically modified
1D1510Other oils and their fractions, obtained solely from olives, whether or not refined, but not chemically modified, including blends of these oils or fractions with oils or fractions of heading 1509
1E1511Palm oil and its fractions, whether or not refined, but not chemically modified
1F1512Sunflower-seed, safflower or cotton-seed oil and fractions thereof, whether or not refined, but not chemically modified
1G1513Coconut (copra), palm kernel or babassu oil and fractions thereof, whether or not refined, but not chemically modified
1H1514Rape, colza or mustard oil and fractions thereof, whether or not refined, but not chemically modified
1I1515Other fixed vegetable or microbial fats and oils (including jojoba oil) and their fractions, whether or not refined, but not chemically modified
1J1516Vegetable fats and oils and their fractions, partly or wholly hydrogenated, interesterified, re-esterified or elaidinised, whether or not refined, but not further prepared
1K1517Edible mixtures or preparations of vegetable fats or vegetable oils or of fractions of different vegetable fats or vegetable oils of this Chapter, other than edible fats or oils or their fractions of heading 1516
1L1518Vegetable fats and oils and their fractions, boiled, oxidised, dehydrated, sulphurised, blown, polymerised by heat in vacuum or in inert gas or otherwise chemically modified, excluding those of heading 1516
1M2701Coal; briquettes, ovoids and similar solid fuels manufactured from coal
1N2702Lignite, whether or not agglomerated, excluding jet
1O2703Peat (including peat litter), whether or not agglomerated
1AA5007Woven fabrics of silk or of silk waste
25111 to 5113Woven fabrics of wool or of animal hair
35208 to 5212Woven fabrics of cotton
45309 to 5311Woven fabrics of other vegetable textile fibres, paper yarn
55407, 5408Woven fabrics of manmade textile materials
65512 to 5516Woven fabrics of manmade staple fibres
6A5608Knotted netting of twine, cordage or rope; made up fishing nets and other made-up nets, of textile materials
6AA5605Imitation Zari thread or yarn made out of Metallised polyester film / plastic film. This entry applies for refund of input tax credit only on polyester film / plastic film
6B5801Corduroy fabrics
6C5806Narrow woven fabrics, other than goods of heading 5807; narrow fabrics consisting of warp without weft assembled by means of an adhesive (bolducs)
760Knitted or crocheted fabrics (all goods)
88601Rail locomotives powered from an external source of electricity or by electric accumulators
98602Other rail locomotives; locomotive tenders; such as Diesel-electric locomotives, Steam locomotives and tenders thereof
108603Self-propelled railway or tramway coaches, vans and trucks, other than those of heading 8604
118604Railway or tramway maintenance or service vehicles, whether or not self-propelled (for example, workshops, cranes, ballast tampers, track liners, testing coaches and track inspection vehicles)
128605Railway or tramway passenger coaches, not self-propelled; luggage vans, post office coaches and other special purpose railway or tramway coaches, not self-propelled (excluding those of heading 8604)
138606Railway or tramway goods vans and wagons, not self-propelled
148607Parts of railway or tramway locomotives or rolling-stock; such as Bogies, Bissel-bogies, axles and wheels, and parts thereof
158608Railway or tramway track fixtures and fittings; mechanical (including electro-mechanical) signalling, safety or traffic control equipment for railways, tramways, roads, inland waterways, parking facilities, port installations or airfields; parts of the foregoing

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How Kireeti Consultants Helps

Kireeti Consultants helps businesses assess their eligibility for GST refunds under the Inverted Duty Structure, calculate the eligible refund amount, review ITC and turnover figures, prepare supporting documents, and assist with the refund claim process.

Frequently Asked Questions

1 What is an Inverted Duty Structure under GST?
An Inverted Duty Structure refers to a situation where the rate of tax on inputs is higher than the rate of tax on output supplies, resulting in accumulation of input tax credit in the electronic credit ledger.
2 Who is eligible to claim a refund under Inverted Duty Structure?
A registered taxpayer under GST is eligible, provided their output supplies are not nil-rated or wholly exempt, the GST rate on output supplies is lower than the rate on inputs, and the output supplies do not include goods specified under Notification No. 5/2017-Central Tax (Rate).
3 What is the time limit for claiming a refund under Inverted Duty Structure?
The refund application must be filed within two years from the relevant date, as defined in Explanation (2) to Section 54 of the CGST Act, 2017. The relevant date is the due date for furnishing the return under Section 39 for the period in which the claim for refund arises.
4 Is ITC on capital goods and input services included in this refund?
No. Net ITC for the Rule 89(5) refund formula covers input tax credit availed only on inputs during the relevant period; ITC on input services and capital goods is excluded from this calculation.
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